HL_8XT0_049

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_049 not in the Motif Atlas

Geometric match to HL_1G1X_003

Geometric discrepancy: 0.2809

The information below is about HL_1G1X_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8XT0|1|S1|C|247
8XT0|1|S1|C|248
8XT0|1|S1|A|249
8XT0|1|S1|C|250
8XT0|1|S1|C|251
8XT0|1|S1|G|252

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SL

Small ribosomal subunit protein uS12m

Chain SS

Small ribosomal subunit protein mS40