HL_8XT0_051

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_051 not in the Motif Atlas

Geometric match to HL_5J7L_016

Geometric discrepancy: 0.0908

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8XT0|1|S1|C|376
8XT0|1|S1|G|377
8XT0|1|S1|A|378
8XT0|1|S1|A|379
8XT0|1|S1|A|380
8XT0|1|S1|G|381

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SO

Small ribosomal subunit protein uS15m

Chain SW

Small ribosomal subunit protein bS21m

Chain Sm

Small ribosomal subunit protein mS37