HL_8XT0_053
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCAACAAA
- Length
- 8 nucleotides
- Bulged bases
- 8XT0|1|S1|C|473, 8XT0|1|S1|A|478
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XT0_053 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.1831
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
8XT0|1|S1|U|468
8XT0|1|S1|C|473
8XT0|1|S1|A|474
8XT0|1|S1|A|475
8XT0|1|S1|C|476
8XT0|1|S1|A|477
8XT0|1|S1|A|478
8XT0|1|S1|A|479
Current chains
- Chain S1
- 12s rRNA
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS2m
- Chain SE
- Small ribosomal subunit protein uS5m
- Chain SF
- Small ribosomal subunit protein bS6m
- Chain SY
- Small ribosomal subunit protein mS23
- Chain Sm
- Small ribosomal subunit protein mS37
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