HL_8XT0_055

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

8XT0|1|S1|C|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_055 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.2755

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8XT0|1|S1|G|570
8XT0|1|S1|A|571
8XT0|1|S1|U|572
8XT0|1|S1|A|573
8XT0|1|S1|A|574
8XT0|1|S1|A|575
8XT0|1|S1|C|576
8XT0|1|S1|C|577
8XT0|1|S1|C|578
8XT0|1|S1|C|579

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SI

Small ribosomal subunit protein uS9m

Chain SJ

Small ribosomal subunit protein uS10m