HL_8XT0_059

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGAAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_059 not in the Motif Atlas

Geometric match to HL_4FRN_005

Geometric discrepancy: 0.1766

The information below is about HL_4FRN_005

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8XT0|1|S1|A|752
8XT0|1|S1|U|753
8XT0|1|S1|G|754
8XT0|1|S1|A|755
8XT0|1|S1|A|756
8XT0|1|S1|A|757
8XT0|1|S1|U|760

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SN

Small ribosomal subunit protein uS14m

Chain Si

Small ribosomal subunit protein mS33