HL_8XT1_024

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACAUG

Length

6 nucleotides

Bulged bases

8XT1|1|L1|A|888, 8XT1|1|L1|U|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT1_024 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1167

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8XT1|1|L1|C|885
8XT1|1|L1|A|886
8XT1|1|L1|C|887
8XT1|1|L1|A|888
8XT1|1|L1|U|889
8XT1|1|L1|G|890

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m