HL_8XT1_032

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT1_032 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.0868

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8XT1|1|L1|A|1232
8XT1|1|L1|U|1233
8XT1|1|L1|A|1234
8XT1|1|L1|A|1235
8XT1|1|L1|C|1236
8XT1|1|L1|U|1237

Current chains

Chain L1

16s rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein bL33m

Chain Li

Large ribosomal subunit protein bL35m