HL_8XT2_013

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

8XT2|1|L1|A|440, 8XT2|1|L1|G|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_013 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1794

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8XT2|1|L1|G|437
8XT2|1|L1|G|438
8XT2|1|L1|A|439
8XT2|1|L1|A|440
8XT2|1|L1|C|441
8XT2|1|L1|A|442
8XT2|1|L1|G|443
8XT2|1|L1|C|444

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L6

Large ribosomal subunit protein mL63

Chain LJ

Large ribosomal subunit protein uL10m

Chain LP

Large ribosomal subunit protein uL16m