HL_8XT2_022

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

8XT2|1|L1|A|830, 8XT2|1|L1|C|831, 8XT2|1|L1|C|832, 8XT2|1|L1|A|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_022 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0987

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8XT2|1|L1|U|827
8XT2|1|L1|U|828
8XT2|1|L1|U|829
8XT2|1|L1|A|830
8XT2|1|L1|C|831
8XT2|1|L1|C|832
8XT2|1|L1|A|833
8XT2|1|L1|A|834
8XT2|1|L1|A|835
8XT2|1|L1|A|836
8XT2|1|L1|A|837

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain LV

39S ribosomal protein L22, mitochondrial

Chain Lh

Large ribosomal subunit protein bL34m