HL_8XT2_028

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAACAGUAACCU

Length

12 nucleotides

Bulged bases

8XT2|1|L1|A|1090

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_028 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3748

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

8XT2|1|L1|A|1083
8XT2|1|L1|A|1084
8XT2|1|L1|A|1085
8XT2|1|L1|C|1086
8XT2|1|L1|A|1087
8XT2|1|L1|G|1088
8XT2|1|L1|U|1089
8XT2|1|L1|A|1090
8XT2|1|L1|A|1122
8XT2|1|L1|C|1123
8XT2|1|L1|C|1124
8XT2|1|L1|U|1125

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein bL9m

Chain Lb

Large ribosomal subunit protein bL28m