HL_8XT2_029

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

8XT2|1|L1|G|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_029 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.11

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8XT2|1|L1|U|1142
8XT2|1|L1|U|1143
8XT2|1|L1|G|1144
8XT2|1|L1|G|1145
8XT2|1|L1|G|1146
8XT2|1|L1|G|1147
8XT2|1|L1|C|1148
8XT2|1|L1|G|1149
8XT2|1|L1|A|1150

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL16m

Chain La

Large ribosomal subunit protein bL27m