HL_8XT2_038

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCACAA

Length

6 nucleotides

Bulged bases

8XT2|1|L1|C|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_038 not in the Motif Atlas

Geometric match to HL_5FMZ_001

Geometric discrepancy: 0.1903

The information below is about HL_5FMZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

8XT2|1|L1|U|1484
8XT2|1|L1|C|1485
8XT2|1|L1|A|1486
8XT2|1|L1|C|1487
8XT2|1|L1|A|1488
8XT2|1|L1|A|1489

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LN

Large ribosomal subunit protein uL14m

Chain LQ

Large ribosomal subunit protein bL17m

Chain LS

Large ribosomal subunit protein bL19m