HL_8XT2_053

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAACAAA

Length

8 nucleotides

Bulged bases

8XT2|1|S1|C|473, 8XT2|1|S1|A|478

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_053 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1455

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8XT2|1|S1|U|468
8XT2|1|S1|C|473
8XT2|1|S1|A|474
8XT2|1|S1|A|475
8XT2|1|S1|C|476
8XT2|1|S1|A|477
8XT2|1|S1|A|478
8XT2|1|S1|A|479

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS2m

Chain SE

Small ribosomal subunit protein uS5m

Chain SF

Small ribosomal subunit protein bS6m

Chain SY

Small ribosomal subunit protein mS23

Chain Sm

Small ribosomal subunit protein mS37