HL_8XT2_055

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

8XT2|1|S1|C|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_055 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.2903

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8XT2|1|S1|G|570
8XT2|1|S1|A|571
8XT2|1|S1|U|572
8XT2|1|S1|A|573
8XT2|1|S1|A|574
8XT2|1|S1|A|575
8XT2|1|S1|C|576
8XT2|1|S1|C|577
8XT2|1|S1|C|578
8XT2|1|S1|C|579

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SI

Small ribosomal subunit protein uS9m

Chain SJ

Small ribosomal subunit protein uS10m