HL_8XT2_059

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUGAAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_059 not in the Motif Atlas

Geometric match to HL_4FRN_005

Geometric discrepancy: 0.1795

The information below is about HL_4FRN_005

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8XT2|1|S1|A|752
8XT2|1|S1|U|753
8XT2|1|S1|G|754
8XT2|1|S1|A|755
8XT2|1|S1|A|756
8XT2|1|S1|A|757
8XT2|1|S1|U|760

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SN

Small ribosomal subunit protein uS14m

Chain Si

Small ribosomal subunit protein mS33