HL_8XT2_061

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

8XT2|1|S1|C|878, 8XT2|1|S1|U|879

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_061 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.2926

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8XT2|1|S1|U|875
8XT2|1|S1|A|876
8XT2|1|S1|A|877
8XT2|1|S1|C|878
8XT2|1|S1|U|879
8XT2|1|S1|A|880
8XT2|1|S1|A|881

Current chains

Chain S1

12s rRNA

Nearby chains

Chain Sc

Small ribosomal subunit protein mS27

Chain Sj

Small ribosomal subunit protein mS34