HL_8XT3_003

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT3_003 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.077

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8XT3|1|L1|C|116
8XT3|1|L1|G|117
8XT3|1|L1|C|118
8XT3|1|L1|A|119
8XT3|1|L1|A|120
8XT3|1|L1|G|121

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL4m

Chain LW

Large ribosomal subunit protein uL23m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41