RNA 3D Hub //

8XT3 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8XT3_0011/L1/52:59No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_8XT3_0021/L1/76:82No text annotation
geometric
HL_7A0S_008
HL_76371.2
HL_8XT3_0031/L1/116:121GNRA
homologous
HL_4WF9_015
HL_34789.4
HL_8XT3_0041/L1/133:137No text annotation
geometric
HL_2Y9H_003
HL_75660.8
HL_8XT3_0051/L1/161:169No text annotation
homologous
HL_7RQB_017
NA
HL_8XT3_0061/L1/177:186T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_8XT3_0071/L1/214:219No text annotation
geometric
HL_7RQB_011
NA
HL_8XT3_0081/L1/264:270No text annotation
geometric
HL_5J7L_025
NA
HL_8XT3_0091/L1/284:293No text annotation
homologous
HL_7RQB_023
NA
HL_8XT3_0101/L1/318:326No text annotation
geometric
HL_5TBW_021
NA
HL_8XT3_0111/L1/365:370No text annotation
homologous
HL_5J7L_157
NA
HL_8XT3_0131/L1/437:444GNRA
homologous
HL_4WF9_027
HL_34789.4
HL_8XT3_0141/L1/459:466No text annotation
homologous
HL_5J7L_160
NA
HL_8XT3_0151/L1/505:515No text annotation
homologous
HL_6PRV_001
HL_20174.1
HL_8XT3_0161/L1/532:539GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_98423.3
HL_8XT3_0171/L1/609:616No text annotation
geometric
HL_5E6M_002
HL_10874.1
HL_8XT3_0181/L1/649:654UNCG
geometric
HL_5J7L_005
NA
HL_8XT3_0201/L1/730:733Mini UNCG
geometric
HL_7A0S_039
HL_90436.3
HL_8XT3_0211/L1/758:765No text annotation
homologous
HL_7RQB_040
NA
HL_8XT3_0221/L1/827:837No text annotation
homologous
HL_5J7L_178
NA
HL_8XT3_0231/L1/848:862No text annotation
HL_8XT3_0241/L1/885:890No text annotation
geometric
HL_2Y9H_003
HL_75660.8
HL_8XT3_0261/L1/942:950No text annotation
homologous
HL_7A0S_048
HL_61418.2
HL_8XT3_0271/L1/985:989No text annotation
HL_8XT3_0281/L1/1020:1029No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_8XT3_0301/L1/1142:1150No text annotation
homologous
HL_7A0S_052
HL_11974.2
HL_8XT3_0311/L1/1158:1170No text annotation
HL_8XT3_0321/L1/1192:1200No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_8XT3_0331/L1/1232:1237GNRA
geometric
HL_5D5L_001
HL_34789.4
HL_8XT3_0341/L1/1288:1296No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_8XT3_0351/L1/1345:1352GNRA variation
homologous
HL_5J7L_194
NA
HL_8XT3_0361/L1/1368:1374No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_8XT3_0371/L1/1411:1416GNRA
homologous
HL_7RQB_063
NA
HL_8XT3_0381/L1/1456:1461GNRA
geometric
HL_2R8S_001
HL_34789.4
HL_8XT3_0391/L1/1484:1489No text annotation
geometric
HL_4WRT_001
HL_19413.2
HL_8XT3_0401/L1/1506:1523No text annotation
geometric
HL_7A0S_074
NA
HL_8XT3_0411/L1/1546:1554No text annotation
geometric
HL_7RQB_068
NA
HL_8XT3_0431/L2/1630:1638Anticodon loop related
geometric
HL_5T83_002
HL_81376.3

Problematic loops

#loop idProblemSequence
HL_8XT3_012No text annotation
HL_8XT3_019No text annotation
HL_8XT3_025No text annotation
HL_8XT3_029Purine riboswitch
HL_8XT3_042tRNA D-loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8XT3_0511/L1/2:8,
1/L1/127:146		No text annotation
IL_8XT3_0011/L1/12:13,
1/L1/98:100		Single bulged A
homologous
IL_7RQB_002
NA
IL_8XT3_0021/L1/69:75,
1/L1/83:88		7x6 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_251
NA
IL_8XT3_0031/L1/175:177,
1/L1/186:188		Isolated non-canonical cWW pair
geometric
IL_7A0S_011
IL_71625.3
IL_8XT3_0041/L1/207:209,
1/L1/225:227		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_01003.4
IL_8XT3_0051/L1/210:213,
1/L1/220:224		No text annotation
IL_8XT3_0061/L1/234:236,
1/L1/346:348		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_01003.4
IL_8XT3_0071/L1/236:240,
1/L1/339:346		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_8XT3_0081/L1/243:245,
1/L1/334:336		Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_8XT3_0091/L1/255:257,
1/L1/307:309		Isolated non-canonical cWW contact
geometric
IL_5UNE_001
IL_87720.1
IL_8XT3_0101/L1/259:260,
1/L1/303:305		Single bulged A
geometric
IL_5J7L_261
NA
IL_8XT3_0111/L1/278:281,
1/L1/296:298		Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_8XT3_0121/L1/315:317,
1/L1/327:331		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_8XT3_0131/L1/376:378,
1/L1/421:424		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_8XT3_0141/L1/387:393,
1/L1/406:412		No text annotation
geometric
IL_5XWG_002
IL_74768.1
IL_8XT3_0151/L1/475:477,
1/L1/584:585		Single bulged C
homologous
IL_5J7L_276
NA
IL_8XT3_0161/L1/479:483,
1/L1/578:582		UAA/GAN
homologous
IL_7RQB_036
NA
IL_8XT3_0171/L1/498:500,
1/L1/520:522		Isolated near basepair
geometric
IL_2ZI0_001
IL_42997.5
IL_8XT3_0181/L1/500:503,
1/L1/517:520		No text annotation
homologous
IL_6PRV_001
IL_28482.1
IL_8XT3_0191/L1/527:530,
1/L1/541:542		No text annotation
homologous
IL_6PRV_002
NA
IL_8XT3_0201/L1/636:643,
1/L1/1004:1010		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_8XT3_0211/L1/659:663,
1/L1/771:778		No text annotation
IL_8XT3_0521/L1/707:711,
1/L1/741:749		No text annotation
IL_8XT3_0531/L1/714:730,
1/L1/733:738		No text annotation
IL_8XT3_0221/L1/786:791,
1/L1/996:998		No text annotation
IL_8XT3_0541/L1/797:799,
1/L1/988:990		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_8XT3_0551/L1/800:803,
1/L1/986:987		Major groove platform; stack outside cWW
geometric
IL_8VTW_065
NA
IL_8XT3_0561/L1/800:808,
1/L1/983:987		No text annotation
geometric
IL_4WF9_117
IL_80252.1
IL_8XT3_0571/L1/803:808,
1/L1/983:986		Intercalated tWH
homologous
IL_4WF9_065
IL_28217.1
IL_8XT3_0231/L1/808:817,
1/L1/978:983		No text annotation
IL_8XT3_0241/L1/820:821,
1/L1/973:975		Single bulged A
homologous
IL_7RQB_069
NA
IL_8XT3_0251/L1/878:881,
1/L1/896:897		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_8XT3_0261/L1/882:883,
1/L1/892:895		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_8XT3_0271/L1/926:927,
1/L1/957:960		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8XT3_0281/L1/927:938,
1/L1/954:957		No text annotation
IL_8XT3_0291/L1/1042:1045,
1/L1/1434:1436		No text annotation
geometric
IL_6DME_003
IL_75527.2
IL_8XT3_0301/L1/1047:1049,
1/L1/1429:1432		No text annotation
homologous
IL_4WF9_079
IL_80025.1
IL_8XT3_0311/L1/1060:1062,
1/L1/1259:1260		Single bulged U
homologous
IL_7RQB_080
NA
IL_8XT3_0321/L1/1063:1064,
1/L1/1255:1258		Minor groove platform
homologous
IL_7RQB_081
NA
IL_8XT3_0331/L1/1074:1076,
1/L1/1132:1133		Minor groove platform
geometric
IL_7A0S_003
IL_34520.3
IL_8XT3_0351/L1/1186:1190,
1/L1/1202:1206		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_8XT3_0361/L1/1270:1271,
1/L1/1315:1317		Single stack bend
geometric
IL_4WF9_089
IL_15011.3
IL_8XT3_0371/L1/1271:1272,
1/L1/1313:1315		Major groove platform
homologous
IL_7RQB_092
NA
IL_8XT3_0381/L1/1273:1276,
1/L1/1310:1312		Major groove platform with extra pair
geometric
IL_7RQB_093
NA
IL_8XT3_0391/L1/1276:1278,
1/L1/1306:1310		Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_8XT3_0401/L1/1283:1285,
1/L1/1298:1301		No text annotation
geometric
IL_4P3T_002
NA
IL_8XT3_0411/L1/1285:1287,
1/L1/1297:1298		Minor groove platform
geometric
IL_4V88_412
NA
IL_8XT3_0421/L1/1324:1325,
1/L1/1397:1399		Major groove platform
homologous
IL_7RQB_096
NA
IL_8XT3_0431/L1/1327:1329,
1/L1/1391:1395		Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_8XT3_0441/L1/1329:1330,
1/L1/1388:1391		No text annotation
geometric
IL_5J7L_341
NA
IL_8XT3_0451/L1/1338:1340,
1/L1/1357:1361		No text annotation
IL_8XT3_0461/L1/1408:1409,
1/L1/1418:1420		Single bulged A
homologous
IL_5J7L_344
NA
IL_8XT3_0471/L1/1445:1447,
1/L1/1469:1471		No text annotation
geometric
IL_2ZNI_001
NA
IL_8XT3_0481/L1/1449:1456,
1/L1/1461:1467		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8XT3_0491/L1/1478:1482,
1/L1/1491:1493		C-loop
geometric
IL_7RQB_104
NA
IL_8XT3_0501/L2/1627:1629,
1/L2/1639:1641		Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_01003.4

Problematic loops

#loop idProblemSequence
IL_8XT3_034No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8XT3_0061/L1/2:8,
1/L1/127:133,
1/L1/137:146		No text annotation
J3_8XT3_0071/L1/8:11,
1/L1/101:115,
1/L1/122:127		No text annotation
J3_8XT3_0011/L1/245:251,
1/L1/313:315,
1/L1/331:334		No text annotation
homologous
J3_7A0S_004
J3_46658.1
J3_8XT3_0021/L1/260:262,
1/L1/272:276,
1/L1/300:303		No text annotation
homologous
J3_7RQB_005
NA
J3_8XT3_0081/L1/483:500,
1/L1/520:527,
1/L1/542:578		No text annotation
J3_8XT3_0031/L1/666:673,
1/L1/753:757,
1/L1/766:768		No text annotation
J3_8XT3_0041/L1/673:675,
1/L1/698:705,
1/L1/751:753		No text annotation
J3_8XT3_0091/L1/1176:1178,
1/L1/1220:1230,
1/L1/1239:1245		No text annotation
J3_8XT3_0051/L1/1334:1337,
1/L1/1362:1364,
1/L1/1378:1384		No text annotation
homologous
J3_7RQB_012
NA
J4_8XT3_0011/L1/644:647,
1/L1/656:657,
1/L1/780:783,
1/L1/1001:1003		No text annotation
J4_8XT3_0021/L1/666:675,
1/L1/698:705,
1/L1/751:757,
1/L1/766:768		No text annotation
J4_8XT3_0031/L1/822:826,
1/L1/838:843,
1/L1/867:872,
1/L1/967:972		No text annotation
J4_8XT3_0041/L1/874:876,
1/L1/899:900,
1/L1/917:926,
1/L1/960:965		No text annotation
homologous
J4_5J7L_026
NA
J5_8XT3_0011/L1/157:159,
1/L1/171:175,
1/L1/188:190,
1/L1/635:636,
1/L1/1010:1011		No text annotation
homologous
J5_7A0S_003
J5_43153.6
J5_8XT3_0021/L1/195:205,
1/L1/229:233,
1/L1/349:352,
1/L1/601:605,
1/L1/620:630		No text annotation
J5_8XT3_0031/L1/1050:1057,
1/L1/1263:1270,
1/L1/1317:1324,
1/L1/1399:1405,
1/L1/1423:1428		No text annotation
J5_8XT3_0041/L1/1067:1070,
1/L1/1137:1140,
1/L1/1152:1153,
1/L1/1175:1176,
1/L1/1245:1252		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J6_8XT3_0011/L1/357:362,
1/L1/373:376,
1/L1/424:428,
1/L1/453:457,
1/L1/468:473,
1/L1/587:596		No text annotation
J6_8XT3_0021/L1/1067:1070,
1/L1/1137:1140,
1/L1/1152:1153,
1/L1/1175:1178,
1/L1/1220:1230,
1/L1/1239:1252		No text annotation

Problematic loops

No problematic loops


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