HL_8XT3_004

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAAUU

Length

5 nucleotides

Bulged bases

8XT3|1|L1|A|134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT3_004 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.3625

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8XT3|1|L1|A|133
8XT3|1|L1|A|134
8XT3|1|L1|A|135
8XT3|1|L1|U|136
8XT3|1|L1|U|137

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LV

39S ribosomal protein L22, mitochondrial

Chain LW

Large ribosomal subunit protein uL23m

Chain LX

Large ribosomal subunit protein uL24m

Chain Ls

Large ribosomal subunit protein mL45