HL_8XU8_014

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_014 not in the Motif Atlas

Homologous match to HL_8P9A_203

Geometric discrepancy: 0.2139

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8XU8|1|2|A|520
8XU8|1|2|A|521
8XU8|1|2|U|522
8XU8|1|2|G|523
8XU8|1|2|U|524
8XU8|1|2|A|525
8XU8|1|2|A|526
8XU8|1|2|A|527
8XU8|1|2|U|528
8XU8|1|2|A|529
8XU8|1|2|C|530
8XU8|1|2|C|531
8XU8|1|2|U|532

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sd

Small ribosomal subunit protein eS24A

Chain x

Elongation factor 2