HL_8XU8_017

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8XU8|1|2|U|779, 8XU8|1|2|U|781, 8XU8|1|2|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_017 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2374

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8XU8|1|2|C|777
8XU8|1|2|G|778
8XU8|1|2|U|779
8XU8|1|2|A|780
8XU8|1|2|U|781
8XU8|1|2|U|782
8XU8|1|2|G|783

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Sd

Small ribosomal subunit protein eS24A