HL_8XU8_018

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_018 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.3987

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8XU8|1|2|A|829
8XU8|1|2|U|830
8XU8|1|2|U|831
8XU8|1|2|U|832
8XU8|1|2|U|833
8XU8|1|2|G|834
8XU8|1|2|U|835
8XU8|1|2|U|836
8XU8|1|2|G|837
8XU8|1|2|G|838
8XU8|1|2|U|839
8XU8|1|2|U|840
8XU8|1|2|U|841
8XU8|1|2|C|842
8XU8|1|2|U|843

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SX

Small ribosomal subunit protein uS17A