HL_8XU8_028

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8XU8|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_028 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.1716

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8XU8|1|2|C|1309
8XU8|1|2|U|1310
8XU8|1|2|U|1311
8XU8|1|2|A|1312
8XU8|1|2|A|1313
8XU8|1|2|U|1314
8XU8|1|2|U|1315
8XU8|1|2|G|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A