HL_8XU8_039

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

8XU8|1|A|U|133, 8XU8|1|A|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_039 not in the Motif Atlas

Homologous match to HL_8P9A_116

Geometric discrepancy: 0.1639

The information below is about HL_8P9A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8XU8|1|A|C|132
8XU8|1|A|U|133
8XU8|1|A|U|134
8XU8|1|A|C|135
8XU8|1|A|G|136

Current chains

Chain A

25S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein eL15A

Chain j

Large ribosomal subunit protein uL29A