HL_8XU8_058

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8XU8|1|A|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_058 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.2545

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8XU8|1|A|C|1076
8XU8|1|A|U|1077
8XU8|1|A|U|1078
8XU8|1|A|A|1079
8XU8|1|A|A|1080
8XU8|1|A|U|1081
8XU8|1|A|U|1082
8XU8|1|A|G|1083

Current chains

Chain A

25S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL18

Chain V

Large ribosomal subunit protein eL21A

Chain d

Large ribosomal subunit protein eL29