HL_8XU8_061

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8XU8|1|A|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_061 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2758

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8XU8|1|A|C|1239
8XU8|1|A|A|1240
8XU8|1|A|U|1241
8XU8|1|A|G|1242
8XU8|1|A|G|1243
8XU8|1|A|A|1244
8XU8|1|A|A|1245
8XU8|1|A|G|1246
8XU8|1|A|U|1247
8XU8|1|A|C|1248
8XU8|1|A|G|1249

Current chains

Chain A

25S rRNA

Nearby chains

Chain x

Elongation factor 2