HL_8XU8_120
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8XU8|1|A|G|2898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XU8_120 not in the Motif Atlas
- Homologous match to HL_8P9A_173
- Geometric discrepancy: 0.2338
- The information below is about HL_8P9A_173
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_46665.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8XU8|1|A|A|2897
8XU8|1|A|G|2898
8XU8|1|A|C|2899
8XU8|1|A|A|2900
8XU8|1|A|G|2901
8XU8|1|A|A|2902
8XU8|1|A|A|2903
8XU8|1|A|U|2904
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL6A
- Chain o
- Large ribosomal subunit protein eL40A
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