HL_8XXL_023

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XXL_023 not in the Motif Atlas

Homologous match to HL_8C3A_215

Geometric discrepancy: 0.0796

The information below is about HL_8C3A_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8XXL|1|S2|G|1141
8XXL|1|S2|G|1142
8XXL|1|S2|A|1143
8XXL|1|S2|A|1144
8XXL|1|S2|A|1145
8XXL|1|S2|C|1146

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26