HL_8XXL_025
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8XXL|1|S2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XXL_025 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.086
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8XXL|1|S2|G|1245
8XXL|1|S2|A|1246
8XXL|1|S2|C|1247
8XXL|1|S2|U|1248
8XXL|1|S2|C|1249
8XXL|1|S2|A|1250
8XXL|1|S2|A|1251
8XXL|1|S2|C|1252
8XXL|1|S2|A|1253
8XXL|1|S2|C|1254
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- Programmed cell death protein 4
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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