HL_8XXM_010

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8XXM|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XXM_010 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1452

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8XXM|1|S2|C|462
8XXM|1|S2|C|463
8XXM|1|S2|A|464
8XXM|1|S2|A|465
8XXM|1|S2|G|466
8XXM|1|S2|G|467

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6