HL_8XXM_030

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XXM_030 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.1915

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8XXM|1|S2|C|1460
8XXM|1|S2|G|1461
8XXM|1|S2|U|1462
8XXM|1|S2|U|1463
8XXM|1|S2|C|1464
8XXM|1|S2|A|1465
8XXM|1|S2|G|1466

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sc

40S ribosomal protein S28

Chain Sg

Receptor of activated protein C kinase 1