HL_8XXN_012

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XXN_012 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1537

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8XXN|1|S2|C|539
8XXN|1|S2|U|540
8XXN|1|S2|U|541
8XXN|1|S2|U|542
8XXN|1|S2|C|543
8XXN|1|S2|G|544

Current chains

Chain S2

18S rRNA

Nearby chains

Chain 3G

Eukaryotic translation initiation factor 3 subunit G