HL_8XZ3_011

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

8XZ3|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_011 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.201

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

8XZ3|1|A|U|387
8XZ3|1|A|U|388
8XZ3|1|A|G|389
8XZ3|1|A|G|390
8XZ3|1|A|G|391
8XZ3|1|A|A|392
8XZ3|1|A|U|393
8XZ3|1|A|G|394

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL24