HL_8XZ3_015

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

8XZ3|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_015 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1076

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8XZ3|1|A|G|498
8XZ3|1|A|G|499
8XZ3|1|A|A|500
8XZ3|1|A|C|501
8XZ3|1|A|C|502
8XZ3|1|A|A|503
8XZ3|1|A|C|504
8XZ3|1|A|C|505

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL15