HL_8XZ3_031

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8XZ3|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_031 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2688

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8XZ3|1|A|C|1182
8XZ3|1|A|U|1183
8XZ3|1|A|U|1184
8XZ3|1|A|A|1185
8XZ3|1|A|G|1186
8XZ3|1|A|A|1187
8XZ3|1|A|A|1188
8XZ3|1|A|G|1189
8XZ3|1|A|C|1190
8XZ3|1|A|A|1191
8XZ3|1|A|G|1192

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL11

Chain N

Large ribosomal subunit protein uL16