HL_8XZ3_035

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_035 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.1593

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8XZ3|1|A|G|1396
8XZ3|1|A|U|1397
8XZ3|1|A|G|1398
8XZ3|1|A|A|1399
8XZ3|1|A|G|1400
8XZ3|1|A|A|1401
8XZ3|1|A|A|1402
8XZ3|1|A|C|1403
8XZ3|1|A|C|1404

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein bL17

Chain T

Large ribosomal subunit protein uL22

Chain b

Large ribosomal subunit protein bL32