HL_8XZ3_052

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8XZ3|1|A|A|2137

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_052 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.24

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8XZ3|1|A|G|2134
8XZ3|1|A|U|2135
8XZ3|1|A|A|2136
8XZ3|1|A|A|2137
8XZ3|1|A|C|2138
8XZ3|1|A|U|2139
8XZ3|1|A|A|2140
8XZ3|1|A|U|2141
8XZ3|1|A|A|2142
8XZ3|1|A|A|2143
8XZ3|1|A|C|2144

Current chains

Chain A

23S rRNA

Nearby chains