HL_8XZ3_058

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8XZ3|1|A|A|2492, 8XZ3|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_058 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1094

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8XZ3|1|A|C|2488
8XZ3|1|A|U|2489
8XZ3|1|A|A|2490
8XZ3|1|A|A|2491
8XZ3|1|A|A|2492
8XZ3|1|A|A|2493
8XZ3|1|A|U|2494
8XZ3|1|A|G|2495
8XZ3|1|A|U|2496
8XZ3|1|A|A|2497
8XZ3|1|A|A|2498
8XZ3|1|A|C|2499
8XZ3|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

Large ribosomal subunit protein bL27