HL_8Y0U_004

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

8Y0U|1|C1|U|133, 8Y0U|1|C1|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1389

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8Y0U|1|C1|C|132
8Y0U|1|C1|U|133
8Y0U|1|C1|U|134
8Y0U|1|C1|C|135
8Y0U|1|C1|G|136

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein eL15A

Chain Lh

Large ribosomal subunit protein uL29A