HL_8Y0U_007

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8Y0U|1|C1|G|218, 8Y0U|1|C1|A|219, 8Y0U|1|C1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.1166

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8Y0U|1|C1|G|216
8Y0U|1|C1|U|217
8Y0U|1|C1|G|218
8Y0U|1|C1|A|219
8Y0U|1|C1|G|220
8Y0U|1|C1|A|221
8Y0U|1|C1|A|222
8Y0U|1|C1|U|223
8Y0U|1|C1|C|224

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4A

Chain LY

Large ribosomal subunit protein uL24A