HL_8Y0U_014

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8Y0U|1|C1|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1248

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8Y0U|1|C1|U|640
8Y0U|1|C1|C|641
8Y0U|1|C1|U|642
8Y0U|1|C1|U|643
8Y0U|1|C1|G|644
8Y0U|1|C1|A|645
8Y0U|1|C1|A|646
8Y0U|1|C1|A|647
8Y0U|1|C1|C|648
8Y0U|1|C1|A|649

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain La

Large ribosomal subunit protein uL15

Chain Le

Large ribosomal subunit protein eL32