HL_8Y0U_026

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_026 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.1617

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|G|1148
8Y0U|1|C1|G|1149
8Y0U|1|C1|A|1150
8Y0U|1|C1|U|1151
8Y0U|1|C1|G|1152
8Y0U|1|C1|A|1153
8Y0U|1|C1|A|1154
8Y0U|1|C1|C|1155

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LF

Large ribosomal subunit protein uL30A

Chain Le

Large ribosomal subunit protein eL32

Chain Lf

Large ribosomal subunit protein eL33A