HL_8Y0U_049

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8Y0U|1|C1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_049 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1557

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8Y0U|1|C1|G|2253
8Y0U|1|C1|U|2254
8Y0U|1|C1|A|2255
8Y0U|1|C1|A|2256
8Y0U|1|C1|C|2257
8Y0U|1|C1|U|2258
8Y0U|1|C1|A|2259
8Y0U|1|C1|U|2260
8Y0U|1|C1|G|2261
8Y0U|1|C1|A|2262
8Y0U|1|C1|C|2263

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA