HL_8Y0U_054

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_054 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2645

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8Y0U|1|C1|C|2568
8Y0U|1|C1|A|2569
8Y0U|1|C1|U|2570
8Y0U|1|C1|U|2571
8Y0U|1|C1|C|2572
8Y0U|1|C1|G|2573

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LZ

Large ribosomal subunit protein eL27A