HL_8Y0U_056

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

8Y0U|1|C1|A|2637, 8Y0U|1|C1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_056 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1344

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8Y0U|1|C1|U|2633
8Y0U|1|C1|U|2634
8Y0U|1|C1|A|2635
8Y0U|1|C1|A|2636
8Y0U|1|C1|A|2637
8Y0U|1|C1|C|2638
8Y0U|1|C1|G|2639
8Y0U|1|C1|A|2640
8Y0U|1|C1|U|2641
8Y0U|1|C1|A|2642
8Y0U|1|C1|A|2643
8Y0U|1|C1|C|2644
8Y0U|1|C1|G|2645

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29