3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
UUCAGUGUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8Y0U_059 not in the Motif Atlas
Homologous match to HL_5TBW_058
Geometric discrepancy: 0.1278
The information below is about HL_5TBW_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_34636.1
Basepair signature
cWW-cWW-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

8Y0U|1|C1|U|2724
8Y0U|1|C1|U|2725
8Y0U|1|C1|C|2726
8Y0U|1|C1|A|2727
8Y0U|1|C1|G|2728
8Y0U|1|C1|U|2729
8Y0U|1|C1|G|2730
8Y0U|1|C1|U|2731
8Y0U|1|C1|G|2732

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LQ
Large ribosomal subunit protein eL18A
Chain LT
Large ribosomal subunit protein eL21A
Chain La
Large ribosomal subunit protein uL15
Chain Lo
Large ribosomal subunit protein eL42A

Coloring options:


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