HL_8Y0U_061

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases

8Y0U|1|C1|G|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_061 not in the Motif Atlas

Homologous match to HL_8C3A_061

Geometric discrepancy: 0.092

The information below is about HL_8C3A_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8Y0U|1|C1|C|2776
8Y0U|1|C1|G|2777
8Y0U|1|C1|G|2778
8Y0U|1|C1|A|2779
8Y0U|1|C1|A|2780
8Y0U|1|C1|U|2781
8Y0U|1|C1|U|2782
8Y0U|1|C1|U|2783
8Y0U|1|C1|G|2784

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain La

Large ribosomal subunit protein uL15

Chain Li

Large ribosomal subunit protein eL36A

Chain Lo

Large ribosomal subunit protein eL42A