HL_8Y0U_070

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|A|3243, 8Y0U|1|C1|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_070 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.162

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|C|3240
8Y0U|1|C1|G|3241
8Y0U|1|C1|G|3242
8Y0U|1|C1|A|3243
8Y0U|1|C1|A|3244
8Y0U|1|C1|A|3245
8Y0U|1|C1|G|3246
8Y0U|1|C1|G|3247

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

Large ribosomal subunit protein uL13A