HL_8Y0U_081

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_081 not in the Motif Atlas

Geometric match to HL_5J7L_190

Geometric discrepancy: 0.3471

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8Y0U|1|C2|U|368
8Y0U|1|C2|A|369
8Y0U|1|C2|A|370
8Y0U|1|C2|G|371
8Y0U|1|C2|G|372
8Y0U|1|C2|G|373

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9-A

Chain SL

Small ribosomal subunit protein uS17A

Chain SW

40S ribosomal protein S22-A