HL_8Y0U_095

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8Y0U|1|C2|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_095 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.162

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8Y0U|1|C2|G|997
8Y0U|1|C2|A|998
8Y0U|1|C2|U|999
8Y0U|1|C2|C|1000
8Y0U|1|C2|A|1001
8Y0U|1|C2|G|1002
8Y0U|1|C2|A|1003
8Y0U|1|C2|U|1004
8Y0U|1|C2|A|1005
8Y0U|1|C2|C|1006
8Y0U|1|C2|C|1007

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Small ribosomal subunit protein uS11B

Chain Sa

Small ribosomal subunit protein eS26B